PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009214
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 299aa    MW: 34619.5 Da    PI: 8.719
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32103733PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.3e-1217911398
               TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               + +l++p  f+++ +gk ++  + +l++    +W+v +  + +    v+++GW++Fv +ng++e Df+vFk++g++ f   ++vf+
  Lsa009214 17 LFNLSVPSAFLTNLNGK-RC-LKAILRH-GRHKWSVDI--DDG----VFGDGWRKFVTENGVQEFDFIVFKHQGNMVF--DFMVFD 91
               56799999999777666.44.3444444.5589*****..444....79***********************999999..777776 PP
2B356.26.1e-18150240396
                EE-..-HHHHTT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ++++v k++rl +p +fa+++g++++  ++ + l+d + r+W  +l  +k++ +  +t GW+eF   n+Lk+gD++ F+l+++ e  +v+k 
  Lsa009214 150 ESKITPYVIKKSRLHVPINFARSNGLITRwIHTPVYLMDDTQRTWPATL--TKTKTELCIT-GWREFIVKNHLKVGDVCRFELIKNGEL-PVFKC 240
                45679*******************8777667778***************..****9*9999.*********************996554.66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-16395IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16399IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.052593IPR003340B3 DNA binding domain
CDDcd100172.66E-13691No hitNo description
SMARTSM010194.8E-10893IPR003340B3 DNA binding domain
PfamPF023625.8E-91689IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-18147239IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-19148244IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-17148239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-14148242No hitNo description
PROSITE profilePS5086311.462148243IPR003340B3 DNA binding domain
PfamPF023626.1E-16150241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MADPPPHFFK FIPAGFLFNL SVPSAFLTNL NGKRCLKAIL RHGRHKWSVD IDDGVFGDGW  60
RKFVTENGVQ EFDFIVFKHQ GNMVFDFMVF DQSTCQKHYT NLFDELDEEP LTESDTICIH  120
RRKKLKKRKR NDYASQDKEI FQVDDSGCFE SKITPYVIKK SRLHVPINFA RSNGLITRWI  180
HTPVYLMDDT QRTWPATLTK TKTELCITGW REFIVKNHLK VGDVCRFELI KNGELPVFKC  240
YNTGKNLVEN DIQEKGTSSS TFTITHTSFS SQAYCPQKMI LYLLADFSKP NGLKIGEMX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RKKLKKR
2122128KKLKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF1C9633e-98F1C963_HELAN; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-24B3 family protein